Detailed information of SNP:
|
SNP ID:
sf0819861687(Gbrowse)
Chromosome: chr08 Position: 19861687 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 92.19% | 7.81% |
| All Indica | 778 | 93.57% | 6.43% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 18.46% | 81.54% |
| Indica I | 359 | 93.59% | 6.41% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 206 | 90.78% | 9.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819861687 | G->A | LOC_Os08g32020(LOC_Os08g32020.1) | Non-Synonymous SNP |