Detailed information of SNP:
|
SNP ID:
sf0819866117(Gbrowse)
Chromosome: chr08 Position: 19866117 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 89.34% | 10.66% |
| All Indica | 772 | 88.60% | 11.40% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 14.06% | 85.94% |
| Indica I | 360 | 88.61% | 11.39% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 202 | 79.70% | 20.30% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819866117 | C->T | LOC_Os08g32030(LOC_Os08g32030.1) | Non-Synonymous SNP |