Detailed information of SNP:
|
SNP ID:
sf0819895118(Gbrowse)
Chromosome: chr08 Position: 19895118 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 61.03% | 38.97% |
| All Indica | 799 | 73.59% | 26.41% |
| All Japonica | 497 | 33.40% | 66.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 74.40% | 25.60% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 17.61% | 82.39% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819895118 | A->G | INTERGENIC | None |