Detailed information of SNP:
|
SNP ID:
sf0819931836(Gbrowse)
Chromosome: chr08 Position: 19931836 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 60.11% | 39.89% |
| All Indica | 799 | 34.42% | 65.58% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 43.47% | 56.53% |
| Indica II | 213 | 8.92% | 91.08% |
| Indica Intermediate | 211 | 44.08% | 55.92% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819931836 | G->A | INTERGENIC | None |