Detailed information of SNP:
|
SNP ID:
sf0819939319(Gbrowse)
Chromosome: chr08 Position: 19939319 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1231 | 68.24% | 31.76% |
| All Indica | 691 | 79.74% | 20.26% |
| All Japonica | 493 | 52.54% | 47.46% |
| Aus | 13 | 23.08% | 76.92% |
| Indica I | 315 | 70.79% | 29.21% |
| Indica II | 207 | 91.30% | 8.70% |
| Indica Intermediate | 169 | 82.25% | 17.75% |
| Temperate Japonica | 334 | 47.90% | 52.10% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 65 | 47.69% | 52.31% |
| Group VI/Aromatic | 5 | 100.00% | 0.00% |
| Intermediate | 29 | 75.86% | 24.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819939319 | T->C | INTERGENIC | None |