Detailed information of SNP:
|
SNP ID:
sf0819958857(Gbrowse)
Chromosome: chr08 Position: 19958857 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 84.03% | 15.97% |
| All Indica | 795 | 99.25% | 0.75% |
| All Japonica | 497 | 56.94% | 43.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 208 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 48.36% | 51.64% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819958857 | T->C | INTERGENIC | None |