Detailed information of SNP:
|
SNP ID:
sf0819960655(Gbrowse)
Chromosome: chr08 Position: 19960655 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1379 | 52.43% | 47.57% |
| All Indica | 766 | 52.87% | 47.13% |
| All Japonica | 495 | 49.09% | 50.91% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 358 | 79.61% | 20.39% |
| Indica II | 206 | 16.50% | 83.50% |
| Indica Intermediate | 202 | 42.57% | 57.43% |
| Temperate Japonica | 335 | 53.43% | 46.57% |
| Tropical Japonica | 92 | 27.17% | 72.83% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819960655 | A->G | LOC_Os08g32190(LOC_Os08g32190.1) | Non-Synonymous SNP |