Detailed information of SNP:
|
SNP ID:
sf0819962056(Gbrowse)
Chromosome: chr08 Position: 19962056 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 55.04% | 44.96% |
| All Indica | 784 | 86.86% | 13.14% |
| All Japonica | 495 | 1.21% | 98.79% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 365 | 81.37% | 18.63% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 207 | 88.89% | 11.11% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819962056 | C->T | LOC_Os08g32190(LOC_Os08g32190.1) | INTRON |