Detailed information of SNP:
|
SNP ID:
sf0819966001(Gbrowse)
Chromosome: chr08 Position: 19966001 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1342 | 70.19% | 29.81% |
| All Indica | 750 | 84.13% | 15.87% |
| All Japonica | 477 | 45.91% | 54.09% |
| Aus | 62 | 85.48% | 14.52% |
| Indica I | 348 | 81.32% | 18.68% |
| Indica II | 207 | 88.41% | 11.59% |
| Indica Intermediate | 195 | 84.62% | 15.38% |
| Temperate Japonica | 332 | 41.27% | 58.73% |
| Tropical Japonica | 80 | 61.25% | 38.75% |
| Japonica Intermediate | 65 | 50.77% | 49.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819966001 | C->A | LOC_Os08g32210(LOC_Os08g32210.1) | Non-Synonymous SNP |