Detailed information of SNP:
|
SNP ID:
sf0819966779(Gbrowse)
Chromosome: chr08 Position: 19966779 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1312 | 62.58% | 37.42% |
| All Indica | 764 | 84.82% | 15.18% |
| All Japonica | 430 | 19.53% | 80.47% |
| Aus | 64 | 82.81% | 17.19% |
| Indica I | 359 | 81.89% | 18.11% |
| Indica II | 208 | 90.87% | 9.13% |
| Indica Intermediate | 197 | 83.76% | 16.24% |
| Temperate Japonica | 281 | 13.88% | 86.12% |
| Tropical Japonica | 89 | 37.08% | 62.92% |
| Japonica Intermediate | 60 | 20.00% | 80.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819966779 | C->A | LOC_Os08g32210(LOC_Os08g32210.1) | INTRON |