Detailed information of SNP:
|
SNP ID:
sf0819974341(Gbrowse)
Chromosome: chr08 Position: 19974341 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1361 | 69.58% | 30.42% |
| All Indica | 750 | 48.40% | 51.60% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 61 | 75.41% | 24.59% |
| Indica I | 351 | 56.98% | 43.02% |
| Indica II | 202 | 36.14% | 63.86% |
| Indica Intermediate | 197 | 45.69% | 54.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819974341 | A->G | LOC_Os08g32240(LOC_Os08g32240.1) | Synonymous |