Detailed information of SNP:
|
SNP ID:
sf0819977862(Gbrowse)
Chromosome: chr08 Position: 19977862 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 96.22% | 3.78% |
| All Indica | 784 | 93.75% | 6.25% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 204 | 89.71% | 10.29% |
| Indica Intermediate | 206 | 88.83% | 11.17% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819977862 | T->C | LOC_Os08g32250(LOC_Os08g32250.1) | Non-Synonymous SNP |