Detailed information of SNP:
|
SNP ID:
sf0819981769(Gbrowse)
Chromosome: chr08 Position: 19981769 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1367 | 82.37% | 17.63% |
| All Indica | 750 | 69.20% | 30.80% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 359 | 94.99% | 5.01% |
| Indica II | 193 | 34.20% | 65.80% |
| Indica Intermediate | 198 | 56.57% | 43.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819981769 | T->C | INTERGENIC | None |