Detailed information of SNP:
|
SNP ID:
sf0819981932(Gbrowse)
Chromosome: chr08 Position: 19981932 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1355 | 88.56% | 11.44% |
| All Indica | 737 | 79.78% | 20.22% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 356 | 97.75% | 2.25% |
| Indica II | 185 | 56.22% | 43.78% |
| Indica Intermediate | 196 | 69.39% | 30.61% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819981932 | T->C | LOC_Os08g32260(LOC_Os08g32260.1) | Non-Synonymous SNP |