Detailed information of SNP:
|
SNP ID:
sf0819982315(Gbrowse)
Chromosome: chr08 Position: 19982315 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1366 | 71.74% | 28.26% |
| All Indica | 751 | 53.26% | 46.74% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 62 | 64.52% | 35.48% |
| Indica I | 345 | 73.62% | 26.38% |
| Indica II | 202 | 27.23% | 72.77% |
| Indica Intermediate | 204 | 44.61% | 55.39% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819982315 | A->G | LOC_Os08g32260(LOC_Os08g32260.1) | Synonymous |