Detailed information of SNP:
|
SNP ID:
sf0819982427(Gbrowse)
Chromosome: chr08 Position: 19982427 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1341 | 87.99% | 12.01% |
| All Indica | 743 | 80.75% | 19.25% |
| All Japonica | 478 | 99.58% | 0.42% |
| Aus | 65 | 80.00% | 20.00% |
| Indica I | 364 | 96.70% | 3.30% |
| Indica II | 187 | 59.89% | 40.11% |
| Indica Intermediate | 192 | 70.83% | 29.17% |
| Temperate Japonica | 322 | 99.69% | 0.31% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819982427 | C->T | LOC_Os08g32260(LOC_Os08g32260.1) | Non-Synonymous SNP |