Detailed information of SNP:
|
SNP ID:
sf0819982591(Gbrowse)
Chromosome: chr08 Position: 19982591 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 82.92% | 17.08% |
| All Indica | 764 | 70.29% | 29.71% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 365 | 95.34% | 4.66% |
| Indica II | 200 | 38.50% | 61.50% |
| Indica Intermediate | 199 | 56.28% | 43.72% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819982591 | G->C | LOC_Os08g32260(LOC_Os08g32260.1) | INTRON |