Detailed information of SNP:
|
SNP ID:
sf0819986913(Gbrowse)
Chromosome: chr08 Position: 19986913 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 51.77% | 48.23% |
| All Indica | 765 | 21.96% | 78.04% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 64 | 23.44% | 76.56% |
| Indica I | 352 | 33.52% | 66.48% |
| Indica II | 210 | 7.14% | 92.86% |
| Indica Intermediate | 203 | 17.24% | 82.76% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819986913 | T->A | LOC_Os08g32260(LOC_Os08g32260.1) | Non-Synonymous SNP |