Detailed information of SNP:
|
SNP ID:
sf0819997913(Gbrowse)
Chromosome: chr08 Position: 19997913 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 95.43% | 4.57% |
| All Indica | 779 | 92.17% | 7.83% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 366 | 93.72% | 6.28% |
| Indica II | 208 | 90.38% | 9.62% |
| Indica Intermediate | 205 | 91.22% | 8.78% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819997913 | C->T | INTERGENIC | None |