Detailed information of SNP:
|
SNP ID:
sf0819997983(Gbrowse)
Chromosome: chr08 Position: 19997983 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 62.83% | 37.17% |
| All Indica | 789 | 96.58% | 3.42% |
| All Japonica | 496 | 5.24% | 94.76% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 96.77% | 3.23% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 205 | 94.15% | 5.85% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 16.13% | 83.87% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819997983 | T->C | INTERGENIC | None |