Detailed information of SNP:
|
SNP ID:
sf0819998362(Gbrowse)
Chromosome: chr08 Position: 19998362 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 63.95% | 36.05% |
| All Indica | 794 | 97.61% | 2.39% |
| All Japonica | 495 | 5.45% | 94.55% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 207 | 95.65% | 4.35% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 17.20% | 82.80% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0819998362 | A->G | LOC_Os08g32280(LOC_Os08g32280.1) | Synonymous |