Detailed information of SNP:
|
SNP ID:
sf0820028766(Gbrowse)
Chromosome: chr08 Position: 20028766 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 89.92% | 10.08% |
| All Indica | 799 | 84.86% | 15.14% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 76.00% | 24.00% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820028766 | G->A | INTERGENIC | None |