Detailed information of SNP:
|
SNP ID:
sf0820036057(Gbrowse)
Chromosome: chr08 Position: 20036057 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1315 | 83.19% | 16.81% |
| All Indica | 768 | 99.35% | 0.65% |
| All Japonica | 494 | 57.89% | 42.11% |
| Aus | 16 | 81.25% | 18.75% |
| Indica I | 369 | 99.73% | 0.27% |
| Indica II | 206 | 99.51% | 0.49% |
| Indica Intermediate | 193 | 98.45% | 1.55% |
| Temperate Japonica | 335 | 48.96% | 51.04% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 65 | 56.92% | 43.08% |
| Group VI/Aromatic | 6 | 100.00% | 0.00% |
| Intermediate | 31 | 83.87% | 16.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820036057 | T->C | INTERGENIC | None |