Detailed information of SNP:
|
SNP ID:
sf0820051030(Gbrowse)
Chromosome: chr08 Position: 20051030 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 75.33% | 24.67% |
| All Indica | 799 | 71.46% | 28.54% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 61.33% | 38.67% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820051030 | C->T | INTERGENIC | None |