Detailed information of SNP:
|
SNP ID:
sf0820094538(Gbrowse)
Chromosome: chr08 Position: 20094538 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 71.82% | 28.18% |
| All Indica | 796 | 64.32% | 35.68% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 373 | 56.30% | 43.70% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 210 | 59.52% | 40.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820094538 | A->G | INTERGENIC | None |