Detailed information of SNP:
|
SNP ID:
sf0820094718(Gbrowse)
Chromosome: chr08 Position: 20094718 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 62.67% | 37.33% |
| All Indica | 797 | 95.36% | 4.64% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820094718 | A->G | INTERGENIC | None |