Detailed information of SNP:
|
SNP ID:
sf0820095567(Gbrowse)
Chromosome: chr08 Position: 20095567 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1326 | 58.52% | 41.48% |
| All Indica | 719 | 93.32% | 6.68% |
| All Japonica | 487 | 2.05% | 97.95% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 308 | 92.21% | 7.79% |
| Indica II | 209 | 93.30% | 6.70% |
| Indica Intermediate | 202 | 95.05% | 4.95% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 86 | 3.49% | 96.51% |
| Japonica Intermediate | 66 | 6.06% | 93.94% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820095567 | G->A | INTERGENIC | None |