Detailed information of SNP:
|
SNP ID:
sf0820139049(Gbrowse)
Chromosome: chr08 Position: 20139049 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 50.62% | 49.38% |
| All Indica | 745 | 32.89% | 67.11% |
| All Japonica | 497 | 68.61% | 31.39% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 343 | 34.69% | 65.31% |
| Indica II | 208 | 16.83% | 83.17% |
| Indica Intermediate | 194 | 46.91% | 53.09% |
| Temperate Japonica | 335 | 57.91% | 42.09% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820139049 | T->C | INTERGENIC | None |