Detailed information of SNP:
|
SNP ID:
sf0820141312(Gbrowse)
Chromosome: chr08 Position: 20141312 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 58.97% | 41.03% |
| All Indica | 796 | 58.92% | 41.08% |
| All Japonica | 497 | 65.59% | 34.41% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 54.93% | 45.07% |
| Indica II | 211 | 84.83% | 15.17% |
| Indica Intermediate | 210 | 40.00% | 60.00% |
| Temperate Japonica | 335 | 58.51% | 41.49% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820141312 | A->G | INTERGENIC | None |