Detailed information of SNP:
|
SNP ID:
sf0820143609(Gbrowse)
Chromosome: chr08 Position: 20143609 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 62.62% | 37.38% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 496 | 5.24% | 94.76% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820143609 | T->C | INTERGENIC | None |