Detailed information of SNP:
|
SNP ID:
sf0820144414(Gbrowse)
Chromosome: chr08 Position: 20144414 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 73.77% | 26.23% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 496 | 35.48% | 64.52% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 42.22% | 57.78% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820144414 | C->T | INTERGENIC | None |