Detailed information of SNP:
|
SNP ID:
sf0820257846(Gbrowse)
Chromosome: chr08 Position: 20257846 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 77.36% | 22.64% |
| All Indica | 794 | 96.85% | 3.15% |
| All Japonica | 494 | 44.74% | 55.26% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 206 | 98.06% | 1.94% |
| Temperate Japonica | 333 | 53.45% | 46.55% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 67 | 19.40% | 80.60% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820257846 | G->A | INTERGENIC | None |