Detailed information of SNP:
|
SNP ID:
sf0820311652(Gbrowse)
Chromosome: chr08 Position: 20311652 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 94.57% | 5.43% |
| All Indica | 797 | 93.10% | 6.90% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820311652 | G->A | LOC_Os08g32780(LOC_Os08g32780.1) | INTRON |