Detailed information of SNP:
|
SNP ID:
sf0820372238(Gbrowse)
Chromosome: chr08 Position: 20372238 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 96.68% | 3.32% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 494 | 96.15% | 3.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820372238 | G->T | INTERGENIC | None |