Detailed information of SNP:
|
SNP ID:
sf0820372261(Gbrowse)
Chromosome: chr08 Position: 20372261 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 72.09% | 27.91% |
| All Indica | 798 | 96.49% | 3.51% |
| All Japonica | 489 | 28.22% | 71.78% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 329 | 24.62% | 75.38% |
| Tropical Japonica | 92 | 46.74% | 53.26% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820372261 | C->A | INTERGENIC | None |