Detailed information of SNP:
|
SNP ID:
sf0820387945(Gbrowse)
Chromosome: chr08 Position: 20387945 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 55.88% | 44.12% |
| All Indica | 799 | 28.66% | 71.34% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 18.13% | 81.87% |
| Indica II | 213 | 21.13% | 78.87% |
| Indica Intermediate | 211 | 54.98% | 45.02% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820387945 | C->T | LOC_Os08g32880(LOC_Os08g32880.1) | Synonymous |