Detailed information of SNP:
|
SNP ID:
sf0820400012(Gbrowse)
Chromosome: chr08 Position: 20400012 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 91.84% | 8.16% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 467 | 77.52% | 22.48% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 311 | 70.42% | 29.58% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 64 | 81.25% | 18.75% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820400012 | C->T | LOC_Os08g32910(LOC_Os08g32910.1) | INTRON |