Detailed information of SNP:
|
SNP ID:
sf0820418397(Gbrowse)
Chromosome: chr08 Position: 20418397 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 77.41% | 22.59% |
| All Indica | 798 | 96.62% | 3.38% |
| All Japonica | 493 | 42.39% | 57.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 332 | 43.67% | 56.33% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 67 | 38.81% | 61.19% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820418397 | C->G | INTERGENIC | None |