Detailed information of SNP:
|
SNP ID:
sf0820431302(Gbrowse)
Chromosome: chr08 Position: 20431302 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 89.06% | 10.94% |
| All Indica | 797 | 86.70% | 13.30% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 374 | 84.49% | 15.51% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 79.52% | 20.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820431302 | A->G | INTERGENIC | None |