Detailed information of SNP:
|
SNP ID:
sf0820443097(Gbrowse)
Chromosome: chr08 Position: 20443097 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 73.96% | 26.04% |
| All Indica | 793 | 91.93% | 8.07% |
| All Japonica | 497 | 41.05% | 58.95% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 206 | 84.95% | 15.05% |
| Temperate Japonica | 335 | 31.34% | 68.66% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820443097 | A->G | INTERGENIC | None |