Detailed information of SNP:
|
SNP ID:
sf0820459133(Gbrowse)
Chromosome: chr08 Position: 20459133 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 77.73% | 22.27% |
| All Indica | 799 | 66.58% | 33.42% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 70.93% | 29.07% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 37.44% | 62.56% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820459133 | A->C | LOC_Os08g32980(LOC_Os08g32980.1) | UTR_3_PRIME |