Detailed information of SNP:
|
SNP ID:
sf0820474308(Gbrowse)
Chromosome: chr08 Position: 20474308 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 83.64% | 16.36% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 497 | 62.78% | 37.22% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 71.94% | 28.06% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820474308 | C->T | LOC_Os08g33000(LOC_Os08g33000.1) | INTRON |