Detailed information of SNP:
|
SNP ID:
sf0820476027(Gbrowse)
Chromosome: chr08 Position: 20476027 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 54.03% | 45.97% |
| All Indica | 796 | 85.55% | 14.45% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 211 | 75.83% | 24.17% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820476027 | T->C | LOC_Os08g33000(LOC_Os08g33000.1) | INTRON |