Detailed information of SNP:
|
SNP ID:
sf0820476468(Gbrowse)
Chromosome: chr08 Position: 20476468 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 95.90% | 4.10% |
| All Indica | 797 | 98.24% | 1.76% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 42.42% | 57.58% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820476468 | A->T | INTERGENIC | None |