Detailed information of SNP:
|
SNP ID:
sf0820476665(Gbrowse)
Chromosome: chr08 Position: 20476665 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1376 | 76.09% | 23.91% |
| All Indica | 756 | 66.80% | 33.20% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 368 | 65.76% | 34.24% |
| Indica II | 210 | 87.62% | 12.38% |
| Indica Intermediate | 178 | 44.38% | 55.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820476665 | A->G | INTERGENIC | None |