Detailed information of SNP:
|
SNP ID:
sf0820509952(Gbrowse)
Chromosome: chr08 Position: 20509952 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1250 | 56.16% | 43.84% |
| All Indica | 644 | 19.57% | 80.43% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 56 | 64.29% | 35.71% |
| Indica I | 295 | 12.20% | 87.80% |
| Indica II | 172 | 29.65% | 70.35% |
| Indica Intermediate | 177 | 22.03% | 77.97% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820509952 | A->G | LOC_Os08g33040(LOC_Os08g33040.1) | Synonymous |