Detailed information of SNP:
|
SNP ID:
sf0820521388(Gbrowse)
Chromosome: chr08 Position: 20521388 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 95.35% | 4.65% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820521388 | G->A | LOC_Os08g33045(LOC_Os08g33045.1) | UTR_5_PRIME |