Detailed information of SNP:
|
SNP ID:
sf0820531892(Gbrowse)
Chromosome: chr08 Position: 20531892 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 77.21% | 22.79% |
| All Indica | 797 | 65.37% | 34.63% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 56.53% | 43.47% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 210 | 59.05% | 40.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820531892 | T->A | LOC_Os08g33050(LOC_Os08g33050.1) | INTRON |