Detailed information of SNP:
|
SNP ID:
sf0820538390(Gbrowse)
Chromosome: chr08 Position: 20538390 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1262 | 94.29% | 5.71% |
| All Indica | 702 | 91.17% | 8.83% |
| All Japonica | 492 | 99.19% | 0.81% |
| Aus | 16 | 68.75% | 31.25% |
| Indica I | 317 | 93.06% | 6.94% |
| Indica II | 193 | 88.08% | 11.92% |
| Indica Intermediate | 192 | 91.15% | 8.85% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 96.70% | 3.30% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820538390 | T->C | LOC_Os08g33060(LOC_Os08g33060.1) | INTRON |