Detailed information of SNP:
|
SNP ID:
sf0820678518(Gbrowse)
Chromosome: chr08 Position: 20678518 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 51.52% | 48.48% |
| All Indica | 796 | 83.92% | 16.08% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 209 | 84.21% | 15.79% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0820678518 | T->C | INTERGENIC | None |